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Dr.  Marco Herde

https://orcid.org/0000-0003-2804-0613
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Publications

  1. 2025
  2. Published

    A plastid carbohydrate carrier mediates ribose recycling from nucleotide catabolism and glucose export from starch degradation

    Voß, L., Keller, I., Schröder, R., Mehner-Breitfeld, D., Specht, A., Dräger, G., Rinne, J., Franke, J., Medina Escobar, M. D. L. N., Herde, M., Brüser, T., Neuhaus, H. E. & Witte, C., 5 Nov 2025, In: Nature Communications. 16, 9747.

    Research output: Contribution to journal › Article › Research › peer review

  3. Published

    Proteomic Analysis Infers Optimized ATP-Production in Guard Cell Mitochondria

    Ditz, N., Niehaus, M., Medina Escobar, N., Herde, M. & Eubel, H., 26 Sept 2025, In: Physiologia plantarum. 177, 5, e70529.

    Research output: Contribution to journal › Article › Research › peer review

  4. Published

    Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis

    Hakim, S. E., Choudhary, N., Malhotra, K., Peng, J., Bültemeier, A., Arafa, A., Friedhoff, R., Bauer, M., Eikenberg, J., Witte, C. P., Herde, M., Heretsch, P., Pucker, B. & Franke, J., 10 Jul 2025, In: Nature Communications. 16, 1, 6367.

    Research output: Contribution to journal › Article › Research › peer review

  5. Published

    The vacuolar phosphatases purple acid phosphatase 26 and haloacid dehalogenase IIA2.1 hydrolyze 5'-, 3'-, and 2'-nucleotides derived from RNA degradation

    Firdoos, N., Krumwiede, L., Medina-Escobar, N., Treichel, L., Fischer, L., Herde, M. & Witte, C. P., Jan 2025, In: Plant physiology. 197, 1, kiaf025.

    Research output: Contribution to journal › Article › Research › peer review

  6. 2024
  7. Published

    Nucleotides and nucleotide derivatives as signal molecules in plants

    Witte, C. P. & Herde, M., 4 Dec 2024, In: Journal of experimental botany. 75, 22, p. 6918-6938 21 p.

    Research output: Contribution to journal › Review article › Research › peer review

  8. Published

    Three Arabidopsis UMP kinases have different roles in pyrimidine nucleotide biosynthesis and (deoxy)CMP salvage

    Rinne, J., Niehaus, M., Medina-Escobar, N., Straube, H., Schaarschmidt, F., Rugen, N., Braun, H., Herde, M. & Witte, C., Sept 2024, In: The plant cell. 36, 9, p. 3611-3630 20 p.

    Research output: Contribution to journal › Article › Research › peer review

  9. Published

    Liquid in vitro culture system allows gradual intensification of osmotic stress in Solanum tuberosum through sorbitol

    Wellpott, K., Herde, M., Winkelmann, T. & Bündig, C., 2 Apr 2024, In: Plant Cell, Tissue and Organ Culture. 157, 1, 18 p., 12.

    Research output: Contribution to journal › Article › Research › peer review

  10. Published

    Biosynthesis of the allelopathic alkaloid gramine in barley by a cryptic oxidative rearrangement

    Leite Dias, S., Chuang, L., Liu, S., Seligmann, B., Brendel, F. L., Gabriel Chavez, B., Hoffie, R. E., Hoffie, I., Kumlehn, J., Bültemeier, A., Wolf, J., Herde, M., Witte, C. P., D’Auria, J. C. & Franke, J., 29 Mar 2024, In: SCIENCE. 383, 6690, p. 1448-1454 7 p.

    Research output: Contribution to journal › Article › Research › peer review

  11. 2023
  12. Published

    Pyrimidine catabolism is required to prevent the accumulation of 5-methyluridine in RNA

    Gao, S., Sun, Y., Chen, X., Zhu, C., Liu, X., Wang, W., Gan, L., Lu, Y., Schaarschmidt, F., Herde, M., Witte, C. P. & Chen, M., 11 Aug 2023, In: Nucleic acids research. 51, 14, p. 7451-7464 14 p.

    Research output: Contribution to journal › Article › Research › peer review

  13. Published

    Isotope-Guided Metabolomics Reveals Divergent Incorporation of Valine into Different Flavor Precursor Classes in Chives

    Freke, R., Heinemann, B., Hakim, S. E., Witte, C. P., Herde, M., Hildebrandt, T. M. & Franke, J., 16 May 2023, In: CHEMBIOCHEM. 24, 10, e202300056.

    Research output: Contribution to journal › Article › Research › peer review

  14. Published

    An inosine triphosphate pyrophosphatase safeguards plant nucleic acids from aberrant purine nucleotides

    Straube, H., Straube, J., Rinne, J., Fischer, L., Niehaus, M., Witte, C. P. & Herde, M., 2 Feb 2023, In: New Phytologist. 237, 5, p. 1759-1775 17 p.

    Research output: Contribution to journal › Article › Research › peer review

  15. 2022
  16. Published

    The nucleotide metabolome of germinating Arabidopsis thaliana seeds reveals a central role for thymidine phosphorylation in chloroplast development

    Niehaus, M., Straube, H., Specht, A., Baccolini, C., Witte, C. P. & Herde, M., Oct 2022, In: The plant cell. 34, 10, p. 3790-3813 24 p.

    Research output: Contribution to journal › Article › Research › peer review

  17. Published

    Enzymes and cellular interplay required for flux of fixed nitrogen to ureides in bean nodules

    Voß, L., Heinemann, K. J., Herde, M., Medina-Escobar, N. & Witte, C. P., 10 Sept 2022, In: Nature Communications. 13, 1, 5331.

    Research output: Contribution to journal › Article › Research › peer review

  18. Published

    Purification and Analysis of Nucleotides and Nucleosides from Plants

    Straube, H. & Herde, M., 19 May 2022, Affinity Chromatography: Methods and Protocols. p. 145-155 11 p. (Methods in Molecular Biology; vol. 2466).

    Research output: Chapter in book/report/conference proceeding › Contribution to book/anthology › Research › peer review

  19. Published

    Rapid Affinity Purification of Tagged Plant Mitochondria (Mito-AP)

    Niehaus, M. & Herde, M., 19 May 2022, Affinity Chromatography: Methods and Protocols. p. 121-133 13 p. (Methods in Molecular Biology; vol. 2466).

    Research output: Chapter in book/report/conference proceeding › Contribution to book/anthology › Research › peer review

  20. Published

    Calmodulin‐like protein CML24 interacts with CAMTA2 and WRKY46 to regulate ALMT1‐dependent Al resistance in Arabidopsis thaliana

    Zhu, X., Wang, P., Bai, Z., Herde, M., Ma, Y., Li, N., Liu, S., Huang, C., Cui, R., Hongyu, M., Zhang, M., Wang, H., Wei, T., Quan, T., Zhang, W., Liu, C., Zhang, T. & Yang, Z. B., 17 Feb 2022, In: New Phytologist. 233, 6, p. 2471-2487 17 p.

    Research output: Contribution to journal › Article › Research › peer review

  21. 2021
  22. Published

    Initiation of cytosolic plant purine nucleotide catabolism involves a monospecific xanthosine monophosphate phosphatase

    Heinemann, K. J., Yang, S., Straube, H., Medina-Escobar, N., Varbanova-Herde, M., Herde, M., Rhee, S. & Witte, C., Dec 2021, In: Nature Communications. 12, 1, 6846.

    Research output: Contribution to journal › Article › Research › peer review

  23. Published

    Loss of MAR1 Function is a Marker for Co-Selection of CRISPR-Induced Mutations in Plants

    Rinne, J., Witte, C. & Herde, M., 9 Aug 2021, In: Frontiers in Genome Editing. 3, 723384.

    Research output: Contribution to journal › Article › Research › peer review

  24. Published

    Analysis of Nucleosides and Nucleotides in Plants: An Update on Sample Preparation and LC–MS Techniques

    Straube, H., Witte, C. & Herde, M., 20 Mar 2021, In: Cells. 10, 3, 19 p., 689.

    Research output: Contribution to journal › Review article › Research › peer review

  25. Published

    Enhanced nucleotide analysis enables the quantification of deoxynucleotides in plants and algae revealing connections between nucleoside and deoxynucleoside metabolism

    Straube, H., Niehaus, M., Zwittian, S., Witte, C. & Herde, M., Feb 2021, In: The plant cell. 33, 2, p. 270-289 20 p.

    Research output: Contribution to journal › Article › Research › peer review

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