Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis

Publikation: Beitrag in FachzeitschriftArtikelForschungPeer-Review

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Externe Organisationen

  • Technische Universität Braunschweig
  • Rheinische Friedrich-Wilhelms-Universität Bonn
  • Tanta University
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Details

OriginalspracheEnglisch
Aufsatznummer6367
FachzeitschriftNature Communications
Jahrgang16
Ausgabenummer1
PublikationsstatusVeröffentlicht - 10 Juli 2025

Abstract

Withanolides are steroidal lactones from nightshade (Solanaceae) plants with untapped drug potential due to limited availability of minor representatives caused by lack of biosynthetic pathway knowledge. Here, we combine phylogenomics with metabolic engineering to overcome this limitation. By sequencing the genome of the medicinal plant ashwagandha (Withania somnifera) and comparing it with nine Solanaceae species, we discover a conserved withanolide biosynthesis gene cluster, consisting of two sub gene clusters with differing expression patterns. We establish metabolic engineering platforms in yeast (Saccharomyces cerevisiae) and the model plant Nicotiana benthamiana to reconstitute the first five oxidations of withanolide biosynthesis, catalysed by the cytochrome P450 monooxygenases CYP87G1, CYP88C7, and CYP749B2 and a short-chain dehydrogenase/reductase, producing the aglycone of withanoside V. Enzyme functions are conserved within both sub gene clusters in W. somnifera and between W. somnifera and Physalis pruinosa. Our work sets the basis for biotechnological withanolide production to unlock their pharmaceutical potential.

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Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis. / Hakim, Samuel Edward; Choudhary, Nancy; Malhotra, Karan et al.
in: Nature Communications, Jahrgang 16, Nr. 1, 6367, 10.07.2025.

Publikation: Beitrag in FachzeitschriftArtikelForschungPeer-Review

Hakim, SE, Choudhary, N, Malhotra, K, Peng, J, Bültemeier, A, Arafa, A, Friedhoff, R, Bauer, M, Eikenberg, J, Witte, CP, Herde, M, Heretsch, P, Pucker, B & Franke, J 2025, 'Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis', Nature Communications, Jg. 16, Nr. 1, 6367. https://doi.org/10.1038/s41467-025-61686-1
Hakim, S. E., Choudhary, N., Malhotra, K., Peng, J., Bültemeier, A., Arafa, A., Friedhoff, R., Bauer, M., Eikenberg, J., Witte, C. P., Herde, M., Heretsch, P., Pucker, B., & Franke, J. (2025). Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis. Nature Communications, 16(1), Artikel 6367. https://doi.org/10.1038/s41467-025-61686-1
Hakim SE, Choudhary N, Malhotra K, Peng J, Bültemeier A, Arafa A et al. Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis. Nature Communications. 2025 Jul 10;16(1):6367. doi: 10.1038/s41467-025-61686-1
Hakim, Samuel Edward ; Choudhary, Nancy ; Malhotra, Karan et al. / Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis. in: Nature Communications. 2025 ; Jahrgang 16, Nr. 1.
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abstract = "Withanolides are steroidal lactones from nightshade (Solanaceae) plants with untapped drug potential due to limited availability of minor representatives caused by lack of biosynthetic pathway knowledge. Here, we combine phylogenomics with metabolic engineering to overcome this limitation. By sequencing the genome of the medicinal plant ashwagandha (Withania somnifera) and comparing it with nine Solanaceae species, we discover a conserved withanolide biosynthesis gene cluster, consisting of two sub gene clusters with differing expression patterns. We establish metabolic engineering platforms in yeast (Saccharomyces cerevisiae) and the model plant Nicotiana benthamiana to reconstitute the first five oxidations of withanolide biosynthesis, catalysed by the cytochrome P450 monooxygenases CYP87G1, CYP88C7, and CYP749B2 and a short-chain dehydrogenase/reductase, producing the aglycone of withanoside V. Enzyme functions are conserved within both sub gene clusters in W. somnifera and between W. somnifera and Physalis pruinosa. Our work sets the basis for biotechnological withanolide production to unlock their pharmaceutical potential.",
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AU - Bültemeier, Arne

AU - Arafa, Ahmed

AU - Friedhoff, Ronja

AU - Bauer, Maximilian

AU - Eikenberg, Jessica

AU - Witte, Claus Peter

AU - Herde, Marco

AU - Heretsch, Philipp

AU - Pucker, Boas

AU - Franke, Jakob

N1 - Publisher Copyright: © The Author(s) 2025.

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Y1 - 2025/7/10

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