Details
| Datum der Bereitstellung | 24 Dez. 2026 |
|---|---|
| Herausgeber (Verlag) | Zenodo |
| Ansprechperson | Leopold Sauheitl |
|---|
Beschreibung
Overview
This upload contains data and code supporting the manuscript "Adaptation and resistance of prokaryotic communities in soils under old-growth forest and pasture to drought intensification".
Files Included
A. Incubation experiment data
1.1 ASV.xlsx : Amplicon Sequence Variant (ASV) abundance matrix
1.2 Meta.xlsx : Sample information (time, treatment, repetition).
1.3 Tax_proteo_others.xlsx and 1.4 Taxonomy_phylum_S2.xlsx : taxonomic affiliation of the sequences (Silva Version 138.1)
2.1 Top5_Families.xlsx : Relative abundance of the 5 most abundant families
2.2 Top10_Families.xlsx : Relative abundance of the 10 most abundant families
3.1 BrayCurtis_between_group_df_240910.xlsx : dissimilarity within a treatment and biodiv level
3.2 pairwise_df_no_zero.xlsx : dissimilarity within and between initial soil (t0) prokaryotic communities (primary forest and pasture soils)
4. Physico_chem_t0.xlsx: physicochemical parameters of the initial forest and pasture soils (t0)
5. Flux_all__Inc22.xlsx : CO2 emissions along the incubation experiment
6. Day_69_H2O.xlsx : cumulative C-CO2 emitted at the end of the incubation experiment in+H2O treatments
7. Day_69_Re.xlsx : cumulative C-CO2 emitted at the end of the incubation experiment in +RE treatments
8. C_mass_balance_TableS6_inc_22.xlsx : Carbon balance of each incubation unit including initial and final values of SOC and cumulative C-CO2 emissions at the end of the incubation experiment
B. Scripts
- B1. Phyloseq_plots_stats_Inc22.R : Scripts for statitistical tests and visualizations of Figure 6a and 6b, Tables 3-5 and Table S.7
- B2. Phyloseq_plots_stats_Inc22_part2.R : Scripts for statitistical tests and visualizations of Figure 4, 7 and 8, Tables S.3 and S.4 and Figure S.3
- B3. Phyloseq_plots_stats_Inc22_part3.R : Scripts for statitistical tests and visualizations of Figure S.2
- B4. Stats_pasture_forest_t0.R : Scripts for statitistical tests of Table 2 and Fig 3.B
- B5. Venn_t0_Inc_22.R : Scripts for visualization of Figure 3.A
- B6. GC_fig5a.R : Scripts for visualizations of Figure 5.a
- B7. GC_fig5b.R : Scripts for statitistical tests and visualizations of Figure 5.b
Instructions
1. README.text : See "README.txt" for file relationships and execution steps.
* Required R packages and detailed use instructions are provided in the header comments and first lines of each script.
License
This work is licensed under the Creative Commons Attribution 4.0 International License. This material may be freely shared and adapted for new analyses, if you use our databases: (1) cite our original publication and (2) reference our Zenodo repository in any derived works. Thanks a lot!
This upload contains data and code supporting the manuscript "Adaptation and resistance of prokaryotic communities in soils under old-growth forest and pasture to drought intensification".
Files Included
A. Incubation experiment data
1.1 ASV.xlsx : Amplicon Sequence Variant (ASV) abundance matrix
1.2 Meta.xlsx : Sample information (time, treatment, repetition).
1.3 Tax_proteo_others.xlsx and 1.4 Taxonomy_phylum_S2.xlsx : taxonomic affiliation of the sequences (Silva Version 138.1)
2.1 Top5_Families.xlsx : Relative abundance of the 5 most abundant families
2.2 Top10_Families.xlsx : Relative abundance of the 10 most abundant families
3.1 BrayCurtis_between_group_df_240910.xlsx : dissimilarity within a treatment and biodiv level
3.2 pairwise_df_no_zero.xlsx : dissimilarity within and between initial soil (t0) prokaryotic communities (primary forest and pasture soils)
4. Physico_chem_t0.xlsx: physicochemical parameters of the initial forest and pasture soils (t0)
5. Flux_all__Inc22.xlsx : CO2 emissions along the incubation experiment
6. Day_69_H2O.xlsx : cumulative C-CO2 emitted at the end of the incubation experiment in+H2O treatments
7. Day_69_Re.xlsx : cumulative C-CO2 emitted at the end of the incubation experiment in +RE treatments
8. C_mass_balance_TableS6_inc_22.xlsx : Carbon balance of each incubation unit including initial and final values of SOC and cumulative C-CO2 emissions at the end of the incubation experiment
B. Scripts
- B1. Phyloseq_plots_stats_Inc22.R : Scripts for statitistical tests and visualizations of Figure 6a and 6b, Tables 3-5 and Table S.7
- B2. Phyloseq_plots_stats_Inc22_part2.R : Scripts for statitistical tests and visualizations of Figure 4, 7 and 8, Tables S.3 and S.4 and Figure S.3
- B3. Phyloseq_plots_stats_Inc22_part3.R : Scripts for statitistical tests and visualizations of Figure S.2
- B4. Stats_pasture_forest_t0.R : Scripts for statitistical tests of Table 2 and Fig 3.B
- B5. Venn_t0_Inc_22.R : Scripts for visualization of Figure 3.A
- B6. GC_fig5a.R : Scripts for visualizations of Figure 5.a
- B7. GC_fig5b.R : Scripts for statitistical tests and visualizations of Figure 5.b
Instructions
1. README.text : See "README.txt" for file relationships and execution steps.
* Required R packages and detailed use instructions are provided in the header comments and first lines of each script.
License
This work is licensed under the Creative Commons Attribution 4.0 International License. This material may be freely shared and adapted for new analyses, if you use our databases: (1) cite our original publication and (2) reference our Zenodo repository in any derived works. Thanks a lot!